IL_8JDL_041

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8JDL|1|D|C|1214, 8JDL|1|D|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDL_041 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.3264

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8JDL|1|D|C|1082
8JDL|1|D|U|1083
8JDL|1|D|C|1084
*
8JDL|1|D|G|1213
8JDL|1|D|C|1214
8JDL|1|D|C|1215
8JDL|1|D|C|1216
8JDL|1|D|G|1217

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L7

Chain g

60S ribosomal protein L29