IL_8JDL_081

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

8JDL|1|D|C|1935, 8JDL|1|D|A|2041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDL_081 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.1432

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8JDL|1|D|G|1933
8JDL|1|D|A|1934
8JDL|1|D|C|1935
8JDL|1|D|C|1936
8JDL|1|D|C|1937
8JDL|1|D|C|1938
8JDL|1|D|A|1939
8JDL|1|D|G|1940
8JDL|1|D|A|1941
8JDL|1|D|A|1942
8JDL|1|D|A|1943
8JDL|1|D|A|1944
*
8JDL|1|D|U|2038
8JDL|1|D|G|2039
8JDL|1|D|A|2040
8JDL|1|D|A|2041
8JDL|1|D|A|2042
8JDL|1|D|A|2043
8JDL|1|D|U|2044
8JDL|1|D|G|2045
8JDL|1|D|G|2046
8JDL|1|D|A|2047
8JDL|1|D|U|2048
8JDL|1|D|G|2049
8JDL|1|D|G|2050
8JDL|1|D|C|2051
8JDL|1|D|G|2052
8JDL|1|D|C|2053

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain H

60S ribosomal protein L3

Chain O

60S ribosomal protein L10-like

Chain T

60S ribosomal protein L13a

Chain k

60S ribosomal protein L35a

Chain r

Ubiquitin-60S ribosomal protein L40