IL_8JDL_085

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

8JDL|1|D|G|2343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDL_085 not in the Motif Atlas

Homologous match to IL_8C3A_061

Geometric discrepancy: 0.0661

The information below is about IL_8C3A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

8JDL|1|D|C|2290
8JDL|1|D|G|2291
8JDL|1|D|C|2292
*
8JDL|1|D|G|2342
8JDL|1|D|G|2343
8JDL|1|D|U|2344
8JDL|1|D|G|2345

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain F

5.8S ribosomal RNA; 5.8S rRNA

Chain I

60S ribosomal protein L4

Chain f

60S ribosomal protein L27a

Chain j

60S ribosomal protein L32

Chain v

60S ribosomal protein L28