IL_8JDL_106

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8JDL|1|D|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDL_106 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.0929

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8JDL|1|D|A|2850
8JDL|1|D|G|2851
8JDL|1|D|U|2852
8JDL|1|D|C|2853
8JDL|1|D|G|2854
8JDL|1|D|G|2855
*
8JDL|1|D|C|3837
8JDL|1|D|U|3838
8JDL|1|D|G|3839
8JDL|1|D|U|3840

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain a

60S ribosomal protein L23