IL_8JDL_114
3D structure
- PDB id
- 8JDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- U(PSU)C*GGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDL_114 not in the Motif Atlas
- Geometric match to IL_2ET8_001
- Geometric discrepancy: 0.2076
- The information below is about IL_2ET8_001
- Detailed Annotation
- Stack and bulge
- Broad Annotation
- Stack and bulge
- Motif group
- IL_53541.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8JDL|1|D|U|3694
8JDL|1|D|PSU|3695
8JDL|1|D|C|3696
*
8JDL|1|D|G|3819
8JDL|1|D|G|3820
8JDL|1|D|A|3821
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain G
- 60S ribosomal protein L8
- Chain s
- 60S ribosomal protein L41
- Chain u
- 60S ribosomal protein L37a
- Chain w
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: