IL_8JDL_160

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UGUAU(OMG)U*GCGAAG

Length

13 nucleotides

Bulged bases

8JDL|1|D|U|4634, 8JDL|1|D|U|4636

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDL_160 not in the Motif Atlas

Geometric match to IL_3GS8_001

Geometric discrepancy: 0.3984

The information below is about IL_3GS8_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80926.1

Basepair signature

cWW-cWW-tSH-tHS-L-cWW

Number of instances in this motif group

7

Unit IDs

8JDL|1|D|U|4632
8JDL|1|D|G|4633
8JDL|1|D|U|4634
8JDL|1|D|A|4635
8JDL|1|D|U|4636
8JDL|1|D|OMG|4637
8JDL|1|D|U|4638
*
8JDL|1|D|G|4661
8JDL|1|D|C|4662
8JDL|1|D|G|4663
8JDL|1|D|A|4664
8JDL|1|D|A|4665
8JDL|1|D|G|4666

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain b

60S ribosomal protein L24

Chain i

60S ribosomal protein L31