IL_8JDL_233
3D structure
- PDB id
- 8JDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDL_233 not in the Motif Atlas
- Homologous match to IL_8C3A_439
- Geometric discrepancy: 0.0678
- The information below is about IL_8C3A_439
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8JDL|1|w|G|942
8JDL|1|w|U|943
8JDL|1|w|A|944
8JDL|1|w|U|945
*
8JDL|1|w|A|981
8JDL|1|w|G|982
8JDL|1|w|A|983
8JDL|1|w|C|984
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain AA
- 40S ribosomal protein S14
- Chain G
- 60S ribosomal protein L8
- Chain y
- 40S ribosomal protein S3a
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