IL_8JDL_299

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

8JDL|1|D|A2M|3785, 8JDL|1|D|C|3791, 8JDL|1|D|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDL_299 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0726

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8JDL|1|D|C|3781
8JDL|1|D|5MC|3782
8JDL|1|D|A|3783
8JDL|1|D|A|3784
8JDL|1|D|A2M|3785
8JDL|1|D|U|3786
8JDL|1|D|G|3787
8JDL|1|D|C|3788
8JDL|1|D|C|3789
8JDL|1|D|U|3790
8JDL|1|D|C|3791
8JDL|1|D|OMG|3792
*
8JDL|1|D|OMC|3808
8JDL|1|D|G|3809
8JDL|1|D|C|3810
8JDL|1|D|G|3811

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain s

60S ribosomal protein L41

Chain w

Small subunit ribosomal RNA; SSU rRNA