IL_8JDL_304

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GC(PSU)*GA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDL_304 not in the Motif Atlas

Homologous match to IL_8P9A_330

Geometric discrepancy: 0.4698

The information below is about IL_8P9A_330

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8JDL|1|D|G|4401
8JDL|1|D|C|4402
8JDL|1|D|PSU|4403
*
8JDL|1|D|G|4440
8JDL|1|D|A|4441
8JDL|1|D|PSU|4442

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain O

60S ribosomal protein L10-like

Chain g

60S ribosomal protein L29