IL_8JDM_012

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_012 not in the Motif Atlas

Geometric match to IL_4LFB_054

Geometric discrepancy: 0.3317

The information below is about IL_4LFB_054

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8JDM|1|D|G|177
8JDM|1|D|C|178
*
8JDM|1|D|G|258
8JDM|1|D|C|259
8JDM|1|D|C|260

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L13

Chain m

60S ribosomal protein L35