IL_8JDM_018
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 8JDM|1|D|G|409, 8JDM|1|D|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDM_018 not in the Motif Atlas
- Geometric match to IL_4WF9_015
- Geometric discrepancy: 0.1499
- The information below is about IL_4WF9_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.1
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 9
Unit IDs
8JDM|1|D|G|387
8JDM|1|D|A|388
8JDM|1|D|A|389
8JDM|1|D|C|390
*
8JDM|1|D|G|401
8JDM|1|D|A|402
8JDM|1|D|G|403
8JDM|1|D|U|404
8JDM|1|D|U|405
8JDM|1|D|C|406
8JDM|1|D|A|407
8JDM|1|D|A|408
8JDM|1|D|G|409
8JDM|1|D|A|410
8JDM|1|D|G|411
8JDM|1|D|G|412
8JDM|1|D|G|413
8JDM|1|D|C|414
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain F
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain U
- 60S ribosomal protein L17
- Chain d
- 60S ribosomal protein L26
- Chain q
- 60S ribosomal protein L39
Coloring options: