IL_8JDM_025

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

8JDM|1|D|U|467, 8JDM|1|D|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|D|A|466
8JDM|1|D|U|467
8JDM|1|D|U|468
8JDM|1|D|C|469
8JDM|1|D|A|470
8JDM|1|D|A|471
8JDM|1|D|C|472
*
8JDM|1|D|G|682
8JDM|1|D|C|683
8JDM|1|D|G|684
8JDM|1|D|C|685
8JDM|1|D|A|686
8JDM|1|D|U|687
8JDM|1|D|U|688
8JDM|1|D|U|689

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L6

Chain v

60S ribosomal protein L28