IL_8JDM_114

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8JDM|1|D|A|3663, 8JDM|1|D|U|3679, 8JDM|1|D|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_114 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0644

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8JDM|1|D|C|3660
8JDM|1|D|G|3661
8JDM|1|D|A|3662
8JDM|1|D|A|3663
8JDM|1|D|G|3664
8JDM|1|D|G|3665
*
8JDM|1|D|U|3677
8JDM|1|D|G|3678
8JDM|1|D|U|3679
8JDM|1|D|U|3680
8JDM|1|D|G|3681
8JDM|1|D|A|3682
8JDM|1|D|C|3683
8JDM|1|D|G|3684

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L8

Chain u

60S ribosomal protein L37a

Chain w

Small subunit ribosomal RNA; SSU rRNA