IL_8JDM_157

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8JDM|1|D|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_157 not in the Motif Atlas

Geometric match to IL_4WF9_054

Geometric discrepancy: 0.3707

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8JDM|1|D|C|4582
8JDM|1|D|C|4583
8JDM|1|D|A|4584
8JDM|1|D|U|4585
*
8JDM|1|D|A|4717
8JDM|1|D|G|4718
8JDM|1|D|G|4719
8JDM|1|D|C|4720
8JDM|1|D|G|4721

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain T

60S ribosomal protein L13a