IL_8JDM_194
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 8JDM|1|w|C|65, 8JDM|1|w|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDM_194 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.2832
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8JDM|1|w|U|63
8JDM|1|w|A|64
8JDM|1|w|C|65
8JDM|1|w|G|66
8JDM|1|w|C|67
8JDM|1|w|A|68
*
8JDM|1|w|U|81
8JDM|1|w|G|82
8JDM|1|w|A|83
8JDM|1|w|A|84
8JDM|1|w|A|85
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein S6
- Chain AK
- 40S ribosomal protein S24
Coloring options: