IL_8JDM_213

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CAG*CCUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_213 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.3847

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8JDM|1|w|C|532
8JDM|1|w|A|533
8JDM|1|w|G|534
*
8JDM|1|w|C|549
8JDM|1|w|C|550
8JDM|1|w|U|551
8JDM|1|w|G|552

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S9

Chain AQ

40S ribosomal protein S30