IL_8JDM_226
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GAAAAAA(PSU)(PSU)A*UACCGCAGC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDM_226 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.5767
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8JDM|1|w|G|807
8JDM|1|w|A|808
8JDM|1|w|A|809
8JDM|1|w|A|810
8JDM|1|w|A|811
8JDM|1|w|A|812
8JDM|1|w|A|813
8JDM|1|w|PSU|814
8JDM|1|w|PSU|815
8JDM|1|w|A|816
*
8JDM|1|w|U|848
8JDM|1|w|A|849
8JDM|1|w|C|850
8JDM|1|w|C|851
8JDM|1|w|G|852
8JDM|1|w|C|853
8JDM|1|w|A|854
8JDM|1|w|G|855
8JDM|1|w|C|856
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 1
- 40S ribosomal protein S4, X isoform
- Chain 6
- 40S ribosomal protein S9
- Chain 8
- 40S ribosomal protein S11
- Chain AI
- 40S ribosomal protein S15a
Coloring options: