IL_8JDM_247

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAG*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_247 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.2279

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8JDM|1|w|G|1222
8JDM|1|w|A|1223
8JDM|1|w|G|1224
*
8JDM|1|w|U|1642
8JDM|1|w|PSU|1643
8JDM|1|w|C|1644

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 2

40S ribosomal protein S5

Chain AC

40S ribosomal protein S16

Chain B

Transfer RNA; tRNA