IL_8JDM_248

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CC(PSU)G*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_248 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2842

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8JDM|1|w|C|1230
8JDM|1|w|C|1231
8JDM|1|w|PSU|1232
8JDM|1|w|G|1233
*
8JDM|1|w|C|1525
8JDM|1|w|G|1526
8JDM|1|w|C|1527
8JDM|1|w|G|1528

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S15

Chain AC

40S ribosomal protein S16

Chain AE

40S ribosomal protein S18

Chain AF

40S ribosomal protein S19

Chain AG

40S ribosomal protein S20

Chain B

Transfer RNA; tRNA