IL_8JDM_254

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

G(OMG)U*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_254 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.1447

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8JDM|1|w|G|1327
8JDM|1|w|OMG|1328
8JDM|1|w|U|1329
*
8JDM|1|w|G|1500
8JDM|1|w|C|1501
8JDM|1|w|C|1502

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S3

Chain C

Transfer RNA; tRNA