IL_8JDM_272
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8JDM|1|w|A|1824, 8JDM|1|w|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDM_272 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.3903
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73099.1
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8JDM|1|w|C|1708
8JDM|1|w|G|1709
8JDM|1|w|C|1710
8JDM|1|w|U|1711
*
8JDM|1|w|A|1822
8JDM|1|w|A|1823
8JDM|1|w|A|1824
8JDM|1|w|A|1825
8JDM|1|w|G|1826
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain A
- mRNA
- Chain AB
- 40S ribosomal protein S15
- Chain AJ
- 40S ribosomal protein S23
- Chain C
- Transfer RNA; tRNA
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain s
- 60S ribosomal protein L41
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