IL_8JDM_284

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CCGUG*CCGGCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_284 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.3887

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8JDM|1|D|C|489
8JDM|1|D|C|490
8JDM|1|D|G|491
8JDM|1|D|U|492
8JDM|1|D|G|493
*
8JDM|1|D|C|661
8JDM|1|D|C|662
8JDM|1|D|G|663
8JDM|1|D|G|664
8JDM|1|D|C|665
8JDM|1|D|G|666

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain V

60S ribosomal protein L18

Chain v

60S ribosomal protein L28