IL_8JDM_288
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- CGGUAA*(PSU)AAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDM_288 not in the Motif Atlas
- Homologous match to IL_8GLP_291
- Geometric discrepancy: 0.0551
- The information below is about IL_8GLP_291
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46203.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8JDM|1|D|C|1732
8JDM|1|D|G|1733
8JDM|1|D|G|1734
8JDM|1|D|U|1735
8JDM|1|D|A|1736
8JDM|1|D|A|1737
*
8JDM|1|D|PSU|1792
8JDM|1|D|A|1793
8JDM|1|D|A|1794
8JDM|1|D|A|1795
8JDM|1|D|U|1796
8JDM|1|D|G|1797
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain J
- 60S ribosomal protein L5
- Chain L
- 60S ribosomal protein L7
- Chain O
- 60S ribosomal protein L10-like
- Chain Y
- 60S ribosomal protein L21
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