IL_8JFT_001

3D structure

PDB id

8JFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SaCas9-AcrIIA15 CTD-sgRNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

ACU*AAUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JFT_001 not in the Motif Atlas

Geometric match to IL_5T83_002

Geometric discrepancy: 0.377

The information below is about IL_5T83_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_83497.1

Basepair signature

cWW-L-R-cSH-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8JFT|1|B|A|29
8JFT|1|B|C|30
8JFT|1|B|U|31
*
8JFT|1|B|A|42
8JFT|1|B|A|43
8JFT|1|B|U|44
8JFT|1|B|C|45
8JFT|1|B|U|46

Current chains

Chain B

sgRNA of SaCas9

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9