IL_8JFT_002

3D structure

PDB id

8JFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SaCas9-AcrIIA15 CTD-sgRNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UCA*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JFT_002 not in the Motif Atlas

Geometric match to IL_1L9A_007

Geometric discrepancy: 0.2054

The information below is about IL_1L9A_007

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8JFT|1|B|U|80
8JFT|1|B|C|81
8JFT|1|B|A|82
*
8JFT|1|B|U|89
8JFT|1|B|G|90
8JFT|1|B|G|91

Current chains

Chain B

sgRNA of SaCas9

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9