IL_8JSG_024

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSG_024 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1707

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8JSG|1|g|U|409
8JSG|1|g|G|410
8JSG|1|g|A|411
8JSG|1|g|A|412
8JSG|1|g|G|413
8JSG|1|g|A|414
8JSG|1|g|A|415
8JSG|1|g|G|416
*
8JSG|1|g|U|427
8JSG|1|g|G|428
8JSG|1|g|U|429
8JSG|1|g|A|430
8JSG|1|g|A|431
8JSG|1|g|A|432
8JSG|1|g|G|433

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain l

Small ribosomal subunit protein uS4