IL_8JSG_026

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8JSG|1|g|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSG_026 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1804

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8JSG|1|g|G|446
8JSG|1|g|G|447
8JSG|1|g|A|448
8JSG|1|g|G|449
8JSG|1|g|G|450
*
8JSG|1|g|C|483
8JSG|1|g|G|484
8JSG|1|g|U|485
8JSG|1|g|U|486
8JSG|1|g|A|487
8JSG|1|g|C|488

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain l

Small ribosomal subunit protein uS4

Chain y

30S ribosomal protein S16