IL_8JSG_038

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AGUC*GACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGUC,GACU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSG_038 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.2916

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8JSG|1|g|A|655
8JSG|1|g|G|656
8JSG|1|g|U|657
8JSG|1|g|C|658
*
8JSG|1|g|G|748
8JSG|1|g|A|749
8JSG|1|g|C|750
8JSG|1|g|U|751

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein uS8

Chain u

Small ribosomal subunit protein uS15