IL_8JSG_043

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGGAGC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSG_043 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.3211

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8JSG|1|g|G|774
8JSG|1|g|G|775
8JSG|1|g|G|776
8JSG|1|g|A|777
8JSG|1|g|G|778
8JSG|1|g|C|779
*
8JSG|1|g|G|803
8JSG|1|g|U|804
8JSG|1|g|C|805

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS11