IL_8JSG_050

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSG_050 not in the Motif Atlas

Geometric match to IL_5J7L_050

Geometric discrepancy: 0.3714

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8JSG|1|g|G|941
8JSG|1|g|G|942
8JSG|1|g|U|943
*
8JSG|1|g|A|1340
8JSG|1|g|U|1341
8JSG|1|g|C|1342

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain m

Small ribosomal subunit protein uS7

Chain o

Small ribosomal subunit protein uS9