IL_8JSH_001

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GAU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAU,AUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSH_001 not in the Motif Atlas

Geometric match to IL_4V83_235

Geometric discrepancy: 0.3526

The information below is about IL_4V83_235

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8JSH|1|g|G|27
8JSH|1|g|A|28
8JSH|1|g|U|29
*
8JSH|1|g|A|554
8JSH|1|g|U|555
8JSH|1|g|C|556

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S4

Chain t

Small ribosomal subunit protein uS12