IL_8JSH_013

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8JSH|1|g|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSH_013 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.312

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8JSH|1|g|G|147
8JSH|1|g|G|148
8JSH|1|g|A|149
8JSH|1|g|U|150
8JSH|1|g|A|151
8JSH|1|g|A|152
8JSH|1|g|C|153
*
8JSH|1|g|G|168
8JSH|1|g|C|169
8JSH|1|g|U|170
8JSH|1|g|A|171
8JSH|1|g|A|172
8JSH|1|g|U|173
8JSH|1|g|A|174
8JSH|1|g|C|175

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 3

30S ribosomal protein S20