IL_8JSH_018

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8JSH|1|g|U|244, 8JSH|1|g|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSH_018 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.2718

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8JSH|1|g|G|242
8JSH|1|g|A|243
8JSH|1|g|U|244
8JSH|1|g|U|245
8JSH|1|g|A|246
8JSH|1|g|G|247
*
8JSH|1|g|C|277
8JSH|1|g|G|278
8JSH|1|g|A|279
8JSH|1|g|C|280
8JSH|1|g|G|281
8JSH|1|g|A|282
8JSH|1|g|U|283
8JSH|1|g|C|284

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S17

Chain t

Small ribosomal subunit protein uS12