IL_8JSH_034

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UUAA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSH_034 not in the Motif Atlas

Geometric match to IL_5TBW_091

Geometric discrepancy: 0.3294

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8JSH|1|g|U|593
8JSH|1|g|U|594
8JSH|1|g|A|595
8JSH|1|g|A|596
*
8JSH|1|g|U|644
8JSH|1|g|G|645
8JSH|1|g|G|646

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S17

Chain p

30S ribosomal protein S8