IL_8JSH_043

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSH_043 not in the Motif Atlas

Geometric match to IL_7A0S_049

Geometric discrepancy: 0.3258

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8JSH|1|g|C|779
8JSH|1|g|A|780
8JSH|1|g|A|781
8JSH|1|g|A|782
8JSH|1|g|C|783
*
8JSH|1|g|G|799
8JSH|1|g|G|800
8JSH|1|g|U|801
8JSH|1|g|A|802
8JSH|1|g|G|803

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 2

30S ribosomal protein S21

Chain q

Small ribosomal subunit protein uS11