IL_8JSH_049

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSH_049 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.5757

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8JSH|1|g|G|1401
8JSH|1|g|C|1402
8JSH|1|g|C|1403
8JSH|1|g|C|1404
*
8JSH|1|g|G|1497
8JSH|1|g|U|1498
8JSH|1|g|A|1499
8JSH|1|g|A|1500
8JSH|1|g|C|1501

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain A

Translation initiation factor IF-3