IL_8JSH_063

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8JSH|1|g|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSH_063 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.3037

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8JSH|1|g|C|569
8JSH|1|g|G|570
8JSH|1|g|U|571
8JSH|1|g|A|572
8JSH|1|g|A|573
8JSH|1|g|A|574
8JSH|1|g|G|575
*
8JSH|1|g|C|880
8JSH|1|g|G|881

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S17

Chain t

Small ribosomal subunit protein uS12