IL_8K2A_057

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

8K2A|1|S1|A|44

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2A_057 not in the Motif Atlas

Geometric match to IL_4R4V_004

Geometric discrepancy: 0.2522

The information below is about IL_4R4V_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8K2A|1|S1|U|43
8K2A|1|S1|A|44
8K2A|1|S1|C|45
*
8K2A|1|S1|G|175
8K2A|1|S1|A|176

Current chains

Chain S1

12S rRNA

Nearby chains