IL_8K2A_062

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2A_062 not in the Motif Atlas

Geometric match to IL_3DIL_004

Geometric discrepancy: 0.2135

The information below is about IL_3DIL_004

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

8K2A|1|S1|G|115
8K2A|1|S1|C|116
8K2A|1|S1|A|117
8K2A|1|S1|C|118
*
8K2A|1|S1|G|130
8K2A|1|S1|C|131

Current chains

Chain S1

12S rRNA

Nearby chains

Chain SO

Small ribosomal subunit protein uS15m

Chain SQ

Small ribosomal subunit protein uS17m

Chain Sn

Small ribosomal subunit protein mS38