IL_8K2A_086

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*UCAAG

Length

7 nucleotides

Bulged bases

8K2A|1|S1|C|683, 8K2A|1|S1|A|684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2A_086 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.2552

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8K2A|1|S1|C|615
8K2A|1|S1|G|616
*
8K2A|1|S1|U|682
8K2A|1|S1|C|683
8K2A|1|S1|A|684
8K2A|1|S1|A|685
8K2A|1|S1|G|686

Current chains

Chain S1

12S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein uS5m

Chain SJ

Small ribosomal subunit protein uS10m

Chain SN

Small ribosomal subunit protein uS14m

Chain SZ

Small ribosomal subunit protein uS3m