IL_8K2A_090
3D structure
- PDB id
- 8K2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CC*GCUACAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8K2A|1|S1|C|646
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2A_090 not in the Motif Atlas
- Geometric match to IL_8S95_001
- Geometric discrepancy: 0.2992
- The information below is about IL_8S95_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25652.1
- Basepair signature
- cWW-tSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8K2A|1|S1|C|631
8K2A|1|S1|C|632
*
8K2A|1|S1|G|642
8K2A|1|S1|C|643
8K2A|1|S1|U|644
8K2A|1|S1|A|645
8K2A|1|S1|C|646
8K2A|1|S1|A|647
8K2A|1|S1|A|648
8K2A|1|S1|A|649
8K2A|1|S1|G|650
Current chains
- Chain S1
- 12S rRNA
Nearby chains
- Chain SB
- Small ribosomal subunit protein uS2m
- Chain SE
- Small ribosomal subunit protein uS5m
- Chain SF
- Small ribosomal subunit protein bS6m
- Chain SI
- Small ribosomal subunit protein uS9m
- Chain SW
- Small ribosomal subunit protein bS21m
- Chain SY
- Small ribosomal subunit protein mS23
- Chain Sm
- Small ribosomal subunit protein mS37
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