IL_8K2B_001

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8K2B|1|L1|C|99

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_001 not in the Motif Atlas

Homologous match to IL_7RQB_002

Geometric discrepancy: 0.135

The information below is about IL_7RQB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8K2B|1|L1|C|12
8K2B|1|L1|C|13
*
8K2B|1|L1|G|98
8K2B|1|L1|C|99
8K2B|1|L1|G|100

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL4m

Chain LT

Large ribosomal subunit protein bL20m

Chain Lb

Large ribosomal subunit protein bL28m

Chain Lr

Large ribosomal subunit protein mL44

Chain Lu

Large ribosomal subunit protein uL29m

Chain Ly

Large ribosomal subunit protein mL51