IL_8K2B_005

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CAAAG

Length

9 nucleotides

Bulged bases

8K2B|1|L1|A|222

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2B|1|L1|C|210
8K2B|1|L1|A|211
8K2B|1|L1|A|212
8K2B|1|L1|G|213
*
8K2B|1|L1|C|220
8K2B|1|L1|A|221
8K2B|1|L1|A|222
8K2B|1|L1|A|223
8K2B|1|L1|G|224

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL4m

Chain LO

Large ribosomal subunit protein uL15m

Chain Li

Large ribosomal subunit protein bL35m

Chain Ll

Large ribosomal subunit protein mL38

Chain Lw

Large ribosomal subunit protein mL49