IL_8K2B_013

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUU*ACUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_013 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3455

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8K2B|1|L1|C|376
8K2B|1|L1|U|377
8K2B|1|L1|U|378
*
8K2B|1|L1|A|421
8K2B|1|L1|C|422
8K2B|1|L1|U|423
8K2B|1|L1|G|424

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LO

Large ribosomal subunit protein uL15m

Chain Li

Large ribosomal subunit protein bL35m

Chain Ll

Large ribosomal subunit protein mL38

Chain Lw

Large ribosomal subunit protein mL49

Chain Ly

Large ribosomal subunit protein mL51