IL_8K2B_025

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

8K2B|1|L1|G|985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_025 not in the Motif Atlas

Geometric match to IL_5J7L_307

Geometric discrepancy: 0.0926

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8K2B|1|L1|A|803
8K2B|1|L1|C|804
8K2B|1|L1|U|805
8K2B|1|L1|C|806
8K2B|1|L1|G|807
8K2B|1|L1|G|808
*
8K2B|1|L1|C|983
8K2B|1|L1|U|984
8K2B|1|L1|G|985
8K2B|1|L1|U|986

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LN

Large ribosomal subunit protein uL14m

Chain LS

Large ribosomal subunit protein bL19m