IL_8K2B_027

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8K2B|1|L1|A|974

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_027 not in the Motif Atlas

Homologous match to IL_7RQB_069

Geometric discrepancy: 0.1141

The information below is about IL_7RQB_069

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8K2B|1|L1|C|820
8K2B|1|L1|C|821
*
8K2B|1|L1|G|973
8K2B|1|L1|A|974
8K2B|1|L1|G|975

Current chains

Chain L1

16s rRNA

Nearby chains