IL_8K2B_030

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GC*GUAU

Length

6 nucleotides

Bulged bases

8K2B|1|L1|U|958, 8K2B|1|L1|A|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_030 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.1856

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8K2B|1|L1|G|926
8K2B|1|L1|C|927
*
8K2B|1|L1|G|957
8K2B|1|L1|U|958
8K2B|1|L1|A|959
8K2B|1|L1|U|960

Current chains

Chain L1

16s rRNA

Nearby chains