IL_8K2B_033

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

8K2B|1|L1|C|1048, 8K2B|1|L1|U|1430, 8K2B|1|L1|A|1431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_033 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.115

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

8K2B|1|L1|A|1047
8K2B|1|L1|C|1048
8K2B|1|L1|G|1049
*
8K2B|1|L1|C|1429
8K2B|1|L1|U|1430
8K2B|1|L1|A|1431
8K2B|1|L1|U|1432

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LV

39S ribosomal protein L22, mitochondrial

Chain Lf

Large ribosomal subunit protein bL32m