IL_8K2B_035

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8K2B|1|L1|A|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_035 not in the Motif Atlas

Homologous match to IL_5J7L_324

Geometric discrepancy: 0.0848

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8K2B|1|L1|G|1063
8K2B|1|L1|A|1064
*
8K2B|1|L1|U|1255
8K2B|1|L1|A|1256
8K2B|1|L1|C|1257
8K2B|1|L1|C|1258

Current chains

Chain L1

16s rRNA

Nearby chains