IL_8K2B_040

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_040 not in the Motif Atlas

Geometric match to IL_4V9F_082

Geometric discrepancy: 0.0912

The information below is about IL_4V9F_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

8K2B|1|L1|G|1271
8K2B|1|L1|C|1272
*
8K2B|1|L1|G|1313
8K2B|1|L1|A|1314
8K2B|1|L1|C|1315

Current chains

Chain L1

16s rRNA

Nearby chains

Chain L6

Large ribosomal subunit protein mL63

Chain LC

Large ribosomal subunit protein uL3m

Chain LP

Large ribosomal subunit protein uL16m